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Finance & Accounting

Payroll Management and Compliance Training

This intensive five-day programme equips payroll practitioners, HR professionals, and finance officers with the technical knowledge and practical skills needed to manage payroll accurately, efficiently, and in full compliance with applicable labour and tax legislation. Participants explore payroll computation, statutory deductions, leave management, payroll auditing, and the use of modern payroll systems. The course blends legal frameworks with hands-on exercises to build confidence and competence across all payroll functions.

⏱ 5 Days 📡 In-Person 🎯 Intermediate From KES 80,000

About This Course

Payroll management sits at the intersection of human resources, finance, and legal compliance — and errors in any of these dimensions carry significant financial, legal, and reputational consequences for organisations. Yet many payroll practitioners operate with fragmented knowledge, relying on informal processes and outdated practices that expose their organisations to audit risk, employee grievances, and regulatory penalties.

The Payroll Management and Compliance Training course offered by TrainingComplex is a structured, practitioner-focused programme that builds comprehensive payroll competency from the ground up. Participants move through payroll fundamentals, statutory and regulatory obligations, gross-to-net computation, benefits administration, leave and absence management, payroll reconciliation, and reporting — all in the context of real-world payroll scenarios drawn from diverse sectors and jurisdictions.

Beyond technical computation, the course addresses the governance dimensions of payroll: internal controls, audit readiness, data confidentiality, and compliance with labour law and tax authority requirements. Participants also explore the capabilities of modern payroll software and learn how to design workflows that reduce error, improve turnaround, and support effective financial reporting.

Whether you are new to a payroll role, seeking to formalise and deepen your existing knowledge, or responsible for overseeing payroll in a growing organisation, this course delivers the structured expertise you need to manage payroll with precision and confidence.

Who Should Attend

Learning Objectives

Course Modules

Module 1: Foundations of Payroll Management

  • The role and importance of the payroll function in organisations
  • Key stakeholders in the payroll process: HR, finance, management, and employees
  • Payroll cycle: weekly, bi-weekly, and monthly processing timelines
  • Types of employment and their payroll implications: permanent, contract, casual, and part-time
  • Core payroll terminology: gross pay, net pay, deductions, remittances, and payslips
  • Linking payroll to organisational strategy and workforce planning

Module 2: Legal and Regulatory Framework for Payroll

  • Overview of labour laws governing employment, wages, and working conditions
  • Tax legislation applicable to payroll: income tax, PAYE, and withholding obligations
  • Social security, pension, and provident fund statutory requirements
  • Minimum wage regulations and compliance obligations
  • Data protection laws and their application to payroll records and employee information
  • Penalties and remedies for payroll non-compliance and how to avoid them

Module 3: Employee Classification and Earnings Structures

  • Differentiating employees from independent contractors for payroll purposes
  • Designing salary structures: bands, grades, and benchmarking
  • Types of earnings: basic salary, allowances, overtime, commissions, bonuses, and incentives
  • Taxable versus non-taxable benefits and how they affect gross pay calculations
  • Part-time, shift work, and variable-hour pay computations
  • Documentation requirements for different earnings categories

Module 4: Statutory Deductions and Remittances

  • Computing Pay As You Earn (PAYE) income tax using applicable tax bands and reliefs
  • Calculating employee and employer contributions to pension and provident funds
  • Social security fund contributions: rates, ceilings, and exemptions
  • Other statutory deductions: housing levies, training levies, and local authority charges
  • Preparing and submitting statutory returns to tax and social security authorities
  • Managing deadlines and avoiding late-payment penalties

Module 5: Voluntary Deductions and Benefits Administration

  • Processing loan repayments, salary advances, and staff welfare deductions
  • Administering medical insurance, life cover, and group scheme premiums
  • Union dues, cooperative society deductions, and court orders (garnishments)
  • Employee savings schemes and share purchase plan deductions
  • Reconciling voluntary deductions against payroll registers and remittance schedules
  • Communicating deduction details to employees clearly and transparently

Module 6: Leave Management and Absence Pay

  • Statutory leave entitlements: annual, sick, maternity, paternity, and compassionate leave
  • Calculating leave pay including accruals, encashment, and carry-overs
  • Managing unpaid leave and its effect on gross and net pay
  • Processing sick leave pay with and without medical certificates
  • Leave liability as a financial obligation: recording and reporting on the balance sheet
  • Building a leave management system that integrates with payroll processing

Module 7: Termination, Severance, and Final Pay Processing

  • Types of employment termination: resignation, redundancy, dismissal, and retirement
  • Calculating notice pay, in lieu of notice, and severance packages
  • Processing final payslips including outstanding salary, leave encashment, and deductions
  • Gratuity and end-of-service benefit computation under statutory and contractual requirements
  • Tax treatment of terminal benefits and required withholding obligations
  • Documentation and clearance procedures for off-boarded employees

Module 8: Payroll Controls, Fraud Prevention, and Internal Audit

  • Common payroll fraud schemes: ghost employees, inflated salaries, and unauthorised changes
  • Designing segregation of duties within the payroll processing workflow
  • Authorisation controls: approvals, access rights, and maker-checker protocols
  • Payroll audit trails: maintaining logs for all changes made to employee records
  • Conducting a payroll internal audit: scope, testing procedures, and findings reporting
  • Responding to audit findings and implementing corrective action plans

Module 9: Payroll Reconciliation and Financial Reporting

  • The payroll-to-general-ledger reconciliation process: steps and common variances
  • Preparing the payroll journal and coding entries to correct cost centres and accounts
  • Month-end and year-end payroll closing procedures
  • Statutory payroll reports: P9 forms, annual returns, and certificates of pay
  • Management payroll reports: headcount costs, overtime analysis, and variance reports
  • Using payroll data to support budgeting and workforce cost forecasting

Module 10: Payroll Systems, Automation, and Continuous Improvement

  • Evaluating payroll software options: key features, scalability, and compliance readiness
  • Configuring a payroll system: pay codes, deduction schedules, and tax tables
  • Data migration and system integration with HR and accounting platforms
  • Ensuring payroll data security, backup, and disaster recovery
  • Developing payroll standard operating procedures and policy documentation
  • Building a culture of continuous improvement in payroll through KPIs and benchmarking

Requirements & Prerequisites

Participants should have at least one year of experience in a payroll, HR, finance, or accounting role. A basic understanding of employment contracts, salary structures, or bookkeeping is helpful and will allow delegates to engage more deeply with the computational and compliance content. No advanced accounting or legal qualifications are required to attend this course.

Training Methodology

Organisational Benefits

Where Is Payroll Management and Compliance Training Offered?

This course runs in-person across: Nairobi, Abuja, Kigali, Accra, Addis Ababa, Arusha, Pretoria, Kisumu, Dar es Salaam, Naivasha, Johannesburg, Dubai, Zanzibar, Nakuru, Cape Town, Kampala, Mombasa, Lagos, Riyadh, plus Live Virtual (online) cohorts. Browse live dates for your city below.

Upcoming Schedules

LocationFormatDatesPrice
Nairobi, Kenya In-Person 5 Oct 2026 – 9 Oct 2026 KES 105,000
Abuja, Nigeria In-Person 5 Oct 2026 – 9 Oct 2026 USD 2,800
Kigali, Rwanda In-Person 12 Oct 2026 – 16 Oct 2026 USD 1,900
Accra, Ghana In-Person 19 Oct 2026 – 23 Oct 2026 USD 3,800
Addis Ababa, Ethiopia In-Person 19 Oct 2026 – 23 Oct 2026 USD 2,400
Arusha, Tanzania In-Person 19 Oct 2026 – 23 Oct 2026 USD 2,100
Pretoria, South Africa In-Person 19 Oct 2026 – 23 Oct 2026 USD 3,300
Kisumu, Kenya In-Person 19 Oct 2026 – 23 Oct 2026 KES 120,000
Dar es Salaam, Tanzania In-Person 19 Oct 2026 – 23 Oct 2026 USD 2,300
Naivasha, Kenya In-Person 19 Oct 2026 – 23 Oct 2026 KES 115,000
Live Virtual Online 19 Oct 2026 – 23 Oct 2026 KES 80,000
Johannesburg, South Africa In-Person 19 Oct 2026 – 23 Oct 2026 USD 3,500
Live Virtual Online 24 Oct 2026 – 15 Nov 2026 KES 80,000
Dubai, United Arab Emirates In-Person 26 Oct 2026 – 30 Oct 2026 USD 4,100
Zanzibar, Tanzania In-Person 26 Oct 2026 – 30 Oct 2026 USD 2,500

+234 more dates — view live schedule →

Frequently Asked Questions

Do I need an accounting or HR qualification to attend this course?

No formal qualification is required. The course is designed for practitioners with at least basic exposure to payroll, HR, or finance work. A willingness to engage with numbers and a foundational understanding of employment relationships is sufficient preparation.

Will this course cover payroll laws specific to my country?

The course is built on principles and frameworks that apply across East Africa, West Africa, and Southern Africa, with illustrations drawn from multiple jurisdictions. Trainers contextualise examples to the countries represented in each cohort, and participants are encouraged to reference their own national regulations throughout the exercises.

Is a certificate awarded upon completion?

Yes. Participants who attend the full programme and complete all required exercises receive a Certificate of Completion from TrainingComplex, which can be used to support CPD records and professional portfolio documentation.

Will participants get hands-on practice with payroll software?

Yes. The course includes live demonstrations and guided practice sessions using a representative payroll platform. Participants work through a simulated payroll run covering data entry, deduction processing, report generation, and reconciliation.

Can organisations send multiple staff members to attend together?

Absolutely. TrainingComplex welcomes group bookings, and organisations that enrol three or more participants from the same institution may be eligible for a group discount. In-house delivery at your organisation's premises can also be arranged for teams of six or more.

View Live Schedule & Book →